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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12661 and 12662 are separated by 218 nucleotides
12662 and 12663 are separated by 204 nucleotides
12663 and 12664 are separated by 1503 nucleotides
12664 and 12665 are separated by 508 nucleotides
mRNA_4293: 12661 - KOG1375 Beta tubulin, at 1,820,426 to 1,822,919
12661
mRNA_4294: 12662 - K08851 TP53RK, PRPK, BUD32 TP53 regulating kinase and related kinases, at 1,823,138 to 1,824,204
12662
mRNA_4295: 12663 - K15454 PUS9 tRNA pseudouridine synthase 9, at 1,824,409 to 1,826,962
12663
mRNA_4296: 12664 - Hypothetical Protein, at 1,828,466 to 1,828,997
12664
mRNA_4297: 12665 - K01166 E3.1.27.1 ribonuclease T2, at 1,829,506 to 1,831,349
12665
Group
Condition
mRNA
_4293
mRNA
_4294
mRNA
_4295
mRNA
_4296
mRNA
_4297
12661
12662
12663
12664
12665
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-2.0
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.2
-0.6
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.3
-0.7
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.4
-0.7
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.1
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.5
+0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.2
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.0
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.1
-0.3
+0.1
growth on ypd
YPD
N.D.
N.D.
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.2
-0.1
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
-0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.5
-0.2
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
+0.0
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.2
-0.1
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.1
+0.9
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.0
+0.1
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.7
-0.3
+0.2
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