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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12663 and 12664 are separated by 1503 nucleotides
12664 and 12665 are separated by 508 nucleotides
12665 and 12666 are separated by 137 nucleotides
12666 and 12667 are separated by 228 nucleotides
mRNA_4295: 12663 - K15454 PUS9 tRNA pseudouridine synthase 9, at 1,824,409 to 1,826,962
12663
mRNA_4296: 12664 - Hypothetical Protein, at 1,828,466 to 1,828,997
12664
mRNA_4297: 12665 - K01166 E3.1.27.1 ribonuclease T2, at 1,829,506 to 1,831,349
12665
mRNA_4298: 12666 - Hypothetical Protein, at 1,831,487 to 1,832,179
12666
mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1,832,408 to 1,835,999
12667
Group
Condition
mRNA
_4295
mRNA
_4296
mRNA
_4297
mRNA
_4298
mRNA
_4299
12663
12664
12665
12666
12667
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+0.0
N.D.
-1.7
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-2.0
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.3
N.D.
-1.2
growth on ypd
YPD
+0.1
+0.0
-0.1
N.D.
-1.5
growth on oleic acid
YNB Glucose
-0.2
-0.6
-0.0
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.3
+0.0
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.4
-0.1
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
-0.7
+0.4
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
+0.2
-0.1
-0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.7
+0.2
N.D.
+0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.9
-0.3
N.D.
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.5
-0.2
-0.0
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
+0.1
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
-0.1
+0.3
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
+0.1
N.D.
+0.5
auxotrophy
Dropout Complete
+0.0
-0.1
+0.3
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.5
+0.2
N.D.
+1.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.2
+0.4
N.D.
+0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
+0.4
N.D.
+0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
-0.3
+0.2
N.D.
+0.5
auxotrophy
YNB Glucose
-0.2
-0.1
+0.3
N.D.
+1.6
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