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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12664 and 12665 are separated by 508 nucleotides
12665 and 12666 are separated by 137 nucleotides
12666 and 12667 are separated by 228 nucleotides
12667 and 12668 are separated by 268 nucleotides
mRNA_4296: 12664 - Hypothetical Protein, at 1,828,466 to 1,828,997
12664
mRNA_4297: 12665 - K01166 E3.1.27.1 ribonuclease T2, at 1,829,506 to 1,831,349
12665
mRNA_4298: 12666 - Hypothetical Protein, at 1,831,487 to 1,832,179
12666
mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1,832,408 to 1,835,999
12667
mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1,836,268 to 1,838,617
12668
Group
Condition
mRNA
_4296
mRNA
_4297
mRNA
_4298
mRNA
_4299
mRNA
_4300
12664
12665
12666
12667
12668
growth on ypd
YPD
+0.0
-0.1
N.D.
-1.5
-1.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.3
N.D.
-1.2
-0.9
ypd buoyancy
40 hrs No Buoyancy Separation
-2.0
+0.1
N.D.
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
-0.2
-1.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.0
N.D.
-0.0
-1.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.0
N.D.
-1.7
+0.1
growth on oleic acid
YNB Glucose
-0.6
-0.0
N.D.
-0.3
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
N.D.
+0.5
-2.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.0
N.D.
-0.7
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.1
N.D.
+0.5
-1.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
N.D.
-0.1
-0.2
auxotrophy
Dropout Complete
-0.1
+0.3
N.D.
+0.4
-1.4
growth on ricinoleic acid
YNB Glucose
-0.1
+0.3
N.D.
-0.0
-0.8
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.4
N.D.
+0.5
-1.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
+0.2
N.D.
+0.9
-0.5
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
N.D.
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.7
+0.4
N.D.
+0.6
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.4
N.D.
+0.9
-0.8
auxotrophy
YNB Glucose
-0.1
+0.3
N.D.
+1.6
-1.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
+0.2
N.D.
+1.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
-0.3
N.D.
-0.3
+0.7
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