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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12665 and 12666 are separated by 137 nucleotides
12666 and 12667 are separated by 228 nucleotides
12667 and 12668 are separated by 268 nucleotides
12668 and 12669 are separated by 2146 nucleotides
mRNA_4297: 12665 - K01166 E3.1.27.1 ribonuclease T2, at 1,829,506 to 1,831,349
12665
mRNA_4298: 12666 - Hypothetical Protein, at 1,831,487 to 1,832,179
12666
mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1,832,408 to 1,835,999
12667
mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1,836,268 to 1,838,617
12668
mRNA_4301: 12669 - Hypothetical Protein, at 1,840,764 to 1,841,675
12669
Group
Condition
mRNA
_4297
mRNA
_4298
mRNA
_4299
mRNA
_4300
mRNA
_4301
12665
12666
12667
12668
12669
growth on ypd
YPD
-0.1
N.D.
-1.5
-1.0
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-1.2
-0.9
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
N.D.
-1.7
+0.1
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
N.D.
-0.0
-1.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.0
N.D.
-0.7
-0.6
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
+0.5
-2.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
N.D.
-0.2
-1.5
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
-0.3
-0.7
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
-0.0
-0.8
-0.4
growth on oleic acid
YNB Glucose
-0.0
N.D.
-0.3
-0.7
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.5
-1.7
+0.5
auxotrophy
Dropout Complete
+0.3
N.D.
+0.4
-1.4
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
-0.1
-0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.1
-0.2
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.3
+0.7
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
+0.5
-1.1
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
+0.9
-0.8
-0.4
auxotrophy
YNB Glucose
+0.3
N.D.
+1.6
-1.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.9
-0.5
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
+0.6
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
N.D.
+1.2
-0.1
-0.3
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