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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12666 and 12667 are separated by 228 nucleotides
12667 and 12668 are separated by 268 nucleotides
12668 and 12669 are separated by 2146 nucleotides
12669 and 12670 are separated by 193 nucleotides
mRNA_4298: 12666 - Hypothetical Protein, at 1,831,487 to 1,832,179
12666
mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1,832,408 to 1,835,999
12667
mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1,836,268 to 1,838,617
12668
mRNA_4301: 12669 - Hypothetical Protein, at 1,840,764 to 1,841,675
12669
mRNA_4302: 12670 - K07819 B3GALT1 beta-1,3-galactosyltransferase 1, at 1,841,869 to 1,845,358
12670
Group
Condition
mRNA
_4298
mRNA
_4299
mRNA
_4300
mRNA
_4301
mRNA
_4302
12666
12667
12668
12669
12670
growth on ypd
YPD
N.D.
-1.5
-1.0
-0.6
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-1.2
-0.9
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.7
-0.6
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.9
-0.8
-0.4
-1.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.3
+0.7
-0.1
-1.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
-2.0
-0.2
+1.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.3
-0.7
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.3
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
-0.0
-0.8
-0.4
+0.6
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
-1.5
+0.3
+0.8
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.5
-1.7
+0.5
+0.3
auxotrophy
Dropout Complete
N.D.
+0.4
-1.4
+0.3
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-1.5
-0.1
+1.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-1.1
+0.3
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.2
+0.3
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.3
-0.7
+0.3
+0.8
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-1.7
+0.1
-0.2
+1.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.9
-0.5
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+1.2
-0.1
-0.3
-0.1
auxotrophy
YNB Glucose
N.D.
+1.6
-1.4
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.6
-0.2
+0.0
+0.7
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