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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12668 and 12669 are separated by 2146 nucleotides
12669 and 12670 are separated by 193 nucleotides
12670 and 12671 are separated by 1170 nucleotides
12671 and 12672 are separated by 788 nucleotides
mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1,836,268 to 1,838,617
12668
mRNA_4301: 12669 - Hypothetical Protein, at 1,840,764 to 1,841,675
12669
mRNA_4302: 12670 - K07819 B3GALT1 beta-1,3-galactosyltransferase 1, at 1,841,869 to 1,845,358
12670
mRNA_4303: 12671 - K14005 SEC31 protein transport protein SEC31, at 1,846,529 to 1,852,379
12671
mRNA_4304: 12672 - Hypothetical Protein, at 1,853,168 to 1,855,421
12672
Group
Condition
mRNA
_4300
mRNA
_4301
mRNA
_4302
mRNA
_4303
mRNA
_4304
12668
12669
12670
12671
12672
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.8
-0.4
-1.1
N.D.
-0.2
growth on ypd
YPD
-1.0
-0.6
-0.1
N.D.
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.6
-0.3
-0.2
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.0
-0.2
+1.0
N.D.
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
-0.7
+0.3
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.7
+0.5
+0.3
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.9
-0.1
-0.0
N.D.
+0.2
auxotrophy
YNB Glucose
-1.4
+0.2
+0.3
N.D.
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.7
-0.1
-1.3
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-1.1
+0.3
+0.2
N.D.
+0.0
growth on ricinoleic acid
YNB Glucose
-0.8
-0.4
+0.6
N.D.
+0.0
auxotrophy
Dropout Complete
-1.4
+0.3
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.1
+0.0
N.D.
+0.0
growth on oleic acid
YNB Oleic Acid
-1.5
+0.3
+0.8
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
+0.0
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.1
N.D.
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.5
-0.1
+1.3
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.2
N.D.
+0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
+0.7
N.D.
-0.2
growth on oleic acid
YNB Glucose
-0.7
+0.3
+0.8
N.D.
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.2
+1.8
N.D.
+0.0
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