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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12669 and 12670 are separated by 193 nucleotides
12670 and 12671 are separated by 1170 nucleotides
12671 and 12672 are separated by 788 nucleotides
12672 and 12673 are separated by 1495 nucleotides
mRNA_4301: 12669 - Hypothetical Protein, at 1,840,764 to 1,841,675
12669
mRNA_4302: 12670 - K07819 B3GALT1 beta-1,3-galactosyltransferase 1, at 1,841,869 to 1,845,358
12670
mRNA_4303: 12671 - K14005 SEC31 protein transport protein SEC31, at 1,846,529 to 1,852,379
12671
mRNA_4304: 12672 - Hypothetical Protein, at 1,853,168 to 1,855,421
12672
mRNA_4305: 12673 - SUPERFAMILY--SSF69989, at 1,856,917 to 1,859,154
12673
Group
Condition
mRNA
_4301
mRNA
_4302
mRNA
_4303
mRNA
_4304
mRNA
_4305
12669
12670
12671
12672
12673
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-1.1
N.D.
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.2
N.D.
+0.6
-1.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.3
N.D.
+0.1
+0.3
growth on ypd
YPD
-0.6
-0.1
N.D.
-0.3
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.0
N.D.
+0.0
-0.5
ypd buoyancy
40 hrs Low Buoyancy
-0.7
+0.3
N.D.
-0.3
+0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
N.D.
+0.2
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.3
N.D.
-0.0
-0.9
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.2
N.D.
-0.1
+0.6
auxotrophy
YNB Glucose
+0.2
+0.3
N.D.
-0.0
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
N.D.
+0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.3
+0.2
N.D.
+0.0
-0.4
auxotrophy
Dropout Complete
+0.3
+0.3
N.D.
+0.3
-0.8
growth on oleic acid
YNB Oleic Acid
+0.3
+0.8
N.D.
+0.0
-0.9
growth on ricinoleic acid
YNB Glucose
-0.4
+0.6
N.D.
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+0.7
N.D.
-0.2
-0.2
growth on oleic acid
YNB Glucose
+0.3
+0.8
N.D.
+0.1
-0.6
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.0
N.D.
-0.4
+0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+1.3
N.D.
+0.3
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+1.8
N.D.
+0.0
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+1.0
N.D.
+0.2
+0.4
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