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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12671 and 12672 are separated by 788 nucleotides
12672 and 12673 are separated by 1495 nucleotides
12673 and 12674 are separated by 316 nucleotides
12674 and 12675 are separated by 43 nucleotides
mRNA_4303: 12671 - K14005 SEC31 protein transport protein SEC31, at 1,846,529 to 1,852,379
12671
mRNA_4304: 12672 - Hypothetical Protein, at 1,853,168 to 1,855,421
12672
mRNA_4305: 12673 - SUPERFAMILY--SSF69989, at 1,856,917 to 1,859,154
12673
mRNA_4306: 12674 - Hypothetical Protein, at 1,859,471 to 1,861,932
12674
mRNA_4307: 12675 - Hypothetical Protein, at 1,861,976 to 1,862,718
12675
Group
Condition
mRNA
_4303
mRNA
_4304
mRNA
_4305
mRNA
_4306
mRNA
_4307
12671
12672
12673
12674
12675
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.9
-0.2
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.0
-0.9
+0.2
-0.0
auxotrophy
Dropout Complete
N.D.
+0.3
-0.8
-0.0
-0.0
auxotrophy
YNB Glucose
N.D.
-0.0
-0.6
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.0
-0.5
-0.0
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
-0.4
-0.4
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.6
-1.4
+0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
+0.1
-0.5
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.6
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.4
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.2
-0.2
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.4
-0.2
-0.0
growth on ypd
YPD
N.D.
-0.3
+0.2
+0.2
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
-0.3
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
+0.4
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
+0.4
-0.4
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
+0.7
-0.1
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
-0.4
+0.5
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.3
-0.1
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.6
+0.2
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.1
+0.6
+0.1
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