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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12673 and 12674 are separated by 316 nucleotides
12674 and 12675 are separated by 43 nucleotides
12675 and 12676 are separated by 467 nucleotides
12676 and 12677 are separated by 428 nucleotides
mRNA_4305: 12673 - SUPERFAMILY--SSF69989, at 1,856,917 to 1,859,154
12673
mRNA_4306: 12674 - Hypothetical Protein, at 1,859,471 to 1,861,932
12674
mRNA_4307: 12675 - Hypothetical Protein, at 1,861,976 to 1,862,718
12675
mRNA_4308: 12676 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,863,186 to 1,865,063
12676
mRNA_4309: 12677 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 1,865,492 to 1,868,533
12677
Group
Condition
mRNA
_4305
mRNA
_4306
mRNA
_4307
mRNA
_4308
mRNA
_4309
12673
12674
12675
12676
12677
growth on oleic acid
YNB Oleic Acid
-0.9
-0.2
-0.0
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
-0.4
+0.0
-0.0
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.0
+0.0
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.9
+0.2
-0.0
-0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
+0.0
-0.1
-0.3
growth on oleic acid
YNB Glucose
-0.6
+0.1
-0.1
+0.1
-0.3
auxotrophy
Dropout Complete
-0.8
-0.0
-0.0
+0.4
-0.2
auxotrophy
YNB Glucose
-0.6
+0.1
-0.0
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
-0.1
+0.1
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
-0.0
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.5
+0.3
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.2
+0.1
+0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-1.4
+0.2
+0.2
+0.9
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.6
+0.1
-0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.4
+0.1
+0.2
-0.0
growth on ypd
YPD
+0.2
+0.2
-0.1
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
-0.2
-0.0
+0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
+0.2
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.1
+0.2
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.4
+0.1
+0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.6
+0.2
+0.1
+0.1
-0.0
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