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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12675 and 12676 are separated by 467 nucleotides
12676 and 12677 are separated by 428 nucleotides
12677 and 12678 are separated by 1270 nucleotides
12678 and 12679 are separated by 544 nucleotides
mRNA_4307: 12675 - Hypothetical Protein, at 1,861,976 to 1,862,718
12675
mRNA_4308: 12676 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,863,186 to 1,865,063
12676
mRNA_4309: 12677 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 1,865,492 to 1,868,533
12677
mRNA_4310: 12678 - Hypothetical Protein, at 1,869,804 to 1,870,732
12678
mRNA_4311: 12679 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,871,277 to 1,872,200
12679
Group
Condition
mRNA
_4307
mRNA
_4308
mRNA
_4309
mRNA
_4310
mRNA
_4311
12675
12676
12677
12678
12679
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.4
-0.1
-0.4
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.7
+0.1
-0.4
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.3
-0.4
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.0
-0.3
-0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
-0.1
-0.1
-0.3
growth on ricinoleic acid
YNB Glucose
+0.0
-0.1
-0.3
-0.4
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.4
-0.1
-0.6
+0.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
-0.1
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.1
-0.1
+0.1
-0.0
auxotrophy
Dropout Complete
-0.0
+0.4
-0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.0
+0.3
-0.1
-0.4
auxotrophy
YNB Glucose
-0.0
+0.1
-0.1
+0.3
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
-0.0
-0.1
+0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
-0.0
+0.0
+0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
-0.0
+0.3
-0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.3
-0.1
-0.2
+0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.3
+0.1
+0.2
-0.0
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.0
+0.4
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
+0.9
+0.2
-0.7
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
+0.1
+0.4
+0.3
growth on ypd
YPD
-0.1
+0.3
-0.1
-0.1
+1.1
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