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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12677 and 12678 are separated by 1270 nucleotides
12678 and 12679 are separated by 544 nucleotides
12679 and 12680 are separated by 390 nucleotides
12680 and 12681 are separated by 1648 nucleotides
mRNA_4309: 12677 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 1,865,492 to 1,868,533
12677
mRNA_4310: 12678 - Hypothetical Protein, at 1,869,804 to 1,870,732
12678
mRNA_4311: 12679 - HMMPfam-Glycosyl hydrolases family 16-PF00722,SUPERFAMILY--SSF49899, at 1,871,277 to 1,872,200
12679
mRNA_4312: 12680 - K14802 DRS2, ATP8A phospholipid-transporting ATPase, at 1,872,591 to 1,877,235
12680
mRNA_4313: 12681 - Hypothetical Protein, at 1,878,884 to 1,880,623
12681
Group
Condition
mRNA
_4309
mRNA
_4310
mRNA
_4311
mRNA
_4312
mRNA
_4313
12677
12678
12679
12680
12681
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.0
-1.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.6
+0.4
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.4
-0.0
+0.1
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.4
-0.1
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-0.1
-0.4
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
-0.3
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+0.0
-0.0
+0.1
growth on oleic acid
YNB Glucose
-0.3
-0.4
-0.1
+0.7
+0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.2
+0.3
+0.2
+0.1
auxotrophy
Dropout Complete
-0.2
-0.1
-0.2
+0.4
+0.4
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
+0.1
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.4
+0.3
-0.3
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.1
-0.0
+0.4
+0.2
growth on ricinoleic acid
YNB Glucose
-0.3
-0.4
+0.1
+0.8
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
+0.1
-0.0
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
-0.4
+0.0
+1.1
+0.3
growth on ypd
YPD
-0.1
-0.1
+1.1
-0.1
+0.0
auxotrophy
YNB Glucose
-0.1
+0.3
-0.3
+0.6
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
-0.1
+0.1
+0.8
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.2
-0.0
+0.6
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.3
-0.0
+0.5
+0.6
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