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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12683 and 12684 are separated by 871 nucleotides
12684 and 12685 are separated by 906 nucleotides
12685 and 12686 are separated by 109 nucleotides
12686 and 12687 are separated by 706 nucleotides
mRNA_4315: 12683 - Hypothetical Protein, at 1,883,534 to 1,885,607
12683
mRNA_4316: 12684 - K03178 UBE1, UBA1 ubiquitin-activating enzyme E1, at 1,886,479 to 1,890,750
12684
mRNA_4317: 12685 - K07025 K07025 putative hydrolase of the HAD superfamily, at 1,891,657 to 1,892,743
12685
mRNA_4318: 12686 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1,892,853 to 1,893,990
12686
mRNA_4319: 12687 - Hypothetical Protein, at 1,894,697 to 1,895,182
12687
Group
Condition
mRNA
_4315
mRNA
_4316
mRNA
_4317
mRNA
_4318
mRNA
_4319
12683
12684
12685
12686
12687
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
-0.6
-0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.7
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
N.D.
-0.9
+0.3
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.2
N.D.
-0.4
+0.0
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.2
-0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
N.D.
-0.7
-0.2
+0.4
growth on oleic acid
YNB Glucose
-0.4
N.D.
+0.3
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.2
N.D.
-0.3
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
N.D.
+0.1
-0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
-0.1
-0.1
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.1
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
N.D.
+0.1
+0.3
-0.3
growth on ypd
YPD
+0.1
N.D.
+0.2
+0.3
-0.3
auxotrophy
Dropout Complete
+0.1
N.D.
+0.4
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
+0.1
-0.4
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
N.D.
+0.2
+0.2
-0.0
auxotrophy
YNB Glucose
+0.4
N.D.
+0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
+0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
+0.5
+0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.3
+0.4
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.5
N.D.
+1.1
+0.3
-0.2
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