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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12685 and 12686 are separated by 109 nucleotides
12686 and 12687 are separated by 706 nucleotides
12687 and 12688 are separated by 164 nucleotides
12688 and 12689 are separated by 291 nucleotides
mRNA_4317: 12685 - K07025 K07025 putative hydrolase of the HAD superfamily, at 1,891,657 to 1,892,743
12685
mRNA_4318: 12686 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1,892,853 to 1,893,990
12686
mRNA_4319: 12687 - Hypothetical Protein, at 1,894,697 to 1,895,182
12687
mRNA_4320: 12688 - K03255 TIF31, CLU1 protein TIF31, at 1,895,347 to 1,900,311
12688
mRNA_4321: 12689 - K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1, at 1,900,603 to 1,903,265
12689
Group
Condition
mRNA
_4317
mRNA
_4318
mRNA
_4319
mRNA
_4320
mRNA
_4321
12685
12686
12687
12688
12689
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.1
-0.6
-0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.3
-0.4
-1.1
ypd buoyancy
40 hrs Low Buoyancy
-0.7
-0.1
-0.1
-0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.4
+0.3
-0.6
-0.9
ypd buoyancy
40 hrs High Buoyancy
-0.4
+0.0
-0.1
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
-0.2
+0.4
-1.0
+1.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.1
-0.0
+0.2
-0.1
growth on ricinoleic acid
YNB Glucose
-0.3
-0.3
+0.1
-0.4
+0.6
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.0
+0.1
-0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
+0.3
-0.4
+0.1
+0.9
auxotrophy
YNB Glucose
+0.1
+0.1
-0.2
-0.4
+0.6
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
-0.0
-0.5
+0.5
growth on ypd
YPD
+0.2
+0.3
-0.3
+0.2
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.4
+1.0
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
+0.2
-1.0
+1.6
growth on oleic acid
YNB Oleic Acid
+0.1
-0.0
-0.1
-0.2
+0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.2
-0.4
-0.1
+0.5
growth on oleic acid
YNB Glucose
+0.3
-0.2
-0.1
-0.0
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.2
-0.0
-0.2
+0.7
auxotrophy
Dropout Complete
+0.4
+0.1
-0.3
-0.1
+0.8
auxotrophy
YNB Glucose 75mM Methionine
+1.1
+0.3
-0.2
-0.2
+0.6
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