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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12687 and 12688 are separated by 164 nucleotides
12688 and 12689 are separated by 291 nucleotides
12689 and 12690 are separated by 2208 nucleotides
12690 and 12691 are separated by 372 nucleotides
mRNA_4319: 12687 - Hypothetical Protein, at 1,894,697 to 1,895,182
12687
mRNA_4320: 12688 - K03255 TIF31, CLU1 protein TIF31, at 1,895,347 to 1,900,311
12688
mRNA_4321: 12689 - K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1, at 1,900,603 to 1,903,265
12689
mRNA_4322: 12690 - KOG0254 Predicted transporter (major facilitator superfamily), at 1,905,474 to 1,907,958
12690
mRNA_4323: 12691 - KOG1198 Zinc-binding oxidoreductase, at 1,908,331 to 1,909,628
12691
Group
Condition
mRNA
_4319
mRNA
_4320
mRNA
_4321
mRNA
_4322
mRNA
_4323
12687
12688
12689
12690
12691
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.4
-1.1
-0.1
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
-0.5
+0.4
-0.6
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.6
-0.9
+0.0
+0.2
growth on ypd
YPD
-0.3
+0.2
-0.2
-0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
+1.0
+0.2
-0.4
-0.3
-1.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
+0.5
-0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.3
+0.1
+0.0
-0.4
auxotrophy
YNB Glucose
-0.2
-0.4
+0.6
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
-0.1
-0.1
+0.1
auxotrophy
Dropout Complete
-0.3
-0.1
+0.8
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
+0.6
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.5
+0.5
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
+0.9
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
-0.1
+0.0
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
-0.2
+0.7
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
-0.3
+0.0
+0.3
growth on ricinoleic acid
YNB Glucose
+0.1
-0.4
+0.6
+0.0
-0.0
growth on oleic acid
YNB Oleic Acid
-0.1
-0.2
+0.9
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-1.0
+1.1
+0.3
+0.0
growth on oleic acid
YNB Glucose
-0.1
-0.0
+0.8
+0.0
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-1.0
+1.6
+0.9
-0.1
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