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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12693 and 12694 are separated by 451 nucleotides
12694 and 12695 are separated by 1230 nucleotides
12695 and 12696 are separated by 266 nucleotides
12696 and 12697 are separated by 677 nucleotides
mRNA_4325: 12693 - K03231 EEF1A elongation factor 1-alpha, at 1,912,299 to 1,914,440
12693
mRNA_4326: 12694 - Hypothetical Protein, at 1,914,892 to 1,915,200
12694
mRNA_4327: 12695 - K18754 LIN28 protein lin-28, at 1,916,431 to 1,918,530
12695
mRNA_4328: 12696 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,918,797 to 1,920,453
12696
mRNA_4329: 12697 - KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1), at 1,921,131 to 1,925,118
12697
Group
Condition
mRNA
_4325
mRNA
_4326
mRNA
_4327
mRNA
_4328
mRNA
_4329
12693
12694
12695
12696
12697
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.0
-1.8
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
-0.2
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.1
-0.3
-0.5
N.D.
growth on oleic acid
YNB Glucose
N.D.
-0.4
+0.0
-0.4
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.4
-0.3
-0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.0
+0.0
-0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
-0.2
+0.4
N.D.
auxotrophy
YNB Glucose
N.D.
-0.2
-0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.2
-0.1
N.D.
auxotrophy
Dropout Complete
N.D.
-0.2
-0.4
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.5
-0.1
+0.6
N.D.
growth on ypd
YPD
N.D.
+0.2
+0.1
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.2
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
-0.1
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.3
+1.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.1
+0.7
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
-0.1
+1.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.2
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.2
-0.5
+1.9
N.D.
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