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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12694 and 12695 are separated by 1230 nucleotides
12695 and 12696 are separated by 266 nucleotides
12696 and 12697 are separated by 677 nucleotides
12697 and 12698 are separated by 590 nucleotides
mRNA_4326: 12694 - Hypothetical Protein, at 1,914,892 to 1,915,200
12694
mRNA_4327: 12695 - K18754 LIN28 protein lin-28, at 1,916,431 to 1,918,530
12695
mRNA_4328: 12696 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,918,797 to 1,920,453
12696
mRNA_4329: 12697 - KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1), at 1,921,131 to 1,925,118
12697
mRNA_4330: 12698 - K18738 HEK2, KHD1 heterogeneous nuclear rnp K-like protein 2, at 1,925,709 to 1,927,416
12698
Group
Condition
mRNA
_4326
mRNA
_4327
mRNA
_4328
mRNA
_4329
mRNA
_4330
12694
12695
12696
12697
12698
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
+0.0
-1.8
N.D.
-0.9
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.3
-0.5
N.D.
-1.4
auxotrophy
Dropout Complete
-0.2
-0.4
+0.3
N.D.
-1.7
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.2
-0.0
N.D.
-1.3
growth on oleic acid
YNB Oleic Acid
-0.4
-0.2
-0.3
N.D.
-0.8
auxotrophy
YNB Glucose
-0.2
-0.3
+0.2
N.D.
-1.3
growth on oleic acid
YNB Glucose
-0.4
+0.0
-0.4
N.D.
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-0.2
-0.1
N.D.
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.3
-0.7
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.1
-0.1
N.D.
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.0
-0.4
N.D.
-0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.2
N.D.
-1.1
growth on ypd
YPD
+0.2
+0.1
-0.2
N.D.
-0.7
ypd buoyancy
40 hrs Low Buoyancy
-0.5
-0.2
+0.4
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.1
+0.6
N.D.
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.2
+0.4
N.D.
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.8
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.3
+1.2
N.D.
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.7
N.D.
+0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.1
+1.0
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.5
+1.9
N.D.
+0.4
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