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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12698 and 12699 are separated by 221 nucleotides
12699 and 12700 are separated by 387 nucleotides
12700 and 12701 are separated by 64 nucleotides
12701 and 12702 are separated by 322 nucleotides
mRNA_4330: 12698 - K18738 HEK2, KHD1 heterogeneous nuclear rnp K-like protein 2, at 1,925,709 to 1,927,416
12698
mRNA_4331: 12699 - K15262 BCP1, BCCIP protein BCP1, at 1,927,638 to 1,928,975
12699
mRNA_4332: 12700 - K02912 RP-L32e, RPL32 large subunit ribosomal protein L32e, at 1,929,363 to 1,930,179
12700
mRNA_4333: 12701 - Hypothetical Protein, at 1,930,244 to 1,931,329
12701
mRNA_4334: 12702 - K10534 NR nitrate reductase (NAD(P)H), at 1,931,652 to 1,934,999
12702
Group
Condition
mRNA
_4330
mRNA
_4331
mRNA
_4332
mRNA
_4333
mRNA
_4334
12698
12699
12700
12701
12702
auxotrophy
Dropout Complete
-1.7
N.D.
N.D.
-0.0
-0.0
auxotrophy
YNB Glucose
-1.3
N.D.
N.D.
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.8
N.D.
N.D.
-0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-1.4
N.D.
N.D.
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.3
N.D.
N.D.
+0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-1.1
N.D.
N.D.
-0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
N.D.
N.D.
-0.6
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.9
N.D.
N.D.
-0.3
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.9
N.D.
N.D.
+0.1
+0.1
growth on oleic acid
YNB Oleic Acid
-0.8
N.D.
N.D.
+0.2
-0.1
growth on oleic acid
YNB Glucose
-0.8
N.D.
N.D.
+0.4
-0.0
growth on ypd
YPD
-0.7
N.D.
N.D.
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
N.D.
N.D.
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
N.D.
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.6
N.D.
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
N.D.
-0.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
N.D.
N.D.
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.6
N.D.
N.D.
+0.4
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
N.D.
N.D.
-0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
N.D.
N.D.
+0.0
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
N.D.
N.D.
+0.2
+0.3
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