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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12703 and 12704 are separated by 1338 nucleotides
12704 and 12705 are separated by 1353 nucleotides
12705 and 12706 are separated by 532 nucleotides
12706 and 12707 are separated by 177 nucleotides
mRNA_4335: 12703 - K12620 LSM1 U6 snRNA-associated Sm-like protein LSm1, at 1,935,202 to 1,935,968
12703
mRNA_4336: 12704 - K05863 SLC25A4S, ANT solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31, at 1,937,307 to 1,938,868
12704
mRNA_4337: 12705 - HMMPfam-Secretory lipase-PF03583,SUPERFAMILY--SSF53474, at 1,940,222 to 1,941,811
12705
mRNA_4338: 12706 - SUPERFAMILY--SSF53098, at 1,942,344 to 1,943,662
12706
mRNA_4339: 12707 - K17677 IRC3 ATP-dependent helicase IRC3, at 1,943,840 to 1,947,247
12707
Group
Condition
mRNA
_4335
mRNA
_4336
mRNA
_4337
mRNA
_4338
mRNA
_4339
12703
12704
12705
12706
12707
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.4
-0.7
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
-0.2
+0.0
auxotrophy
YNB Glucose
N.D.
N.D.
-0.0
-0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.1
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.2
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
+0.1
-0.2
growth on ypd
YPD
N.D.
N.D.
-0.7
+0.7
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.4
-0.5
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.3
+0.3
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
-0.4
+0.3
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.2
+0.3
+0.1
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.3
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
-0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.0
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.3
+0.3
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.0
+0.3
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
+0.5
-0.2
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