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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12706 and 12707 are separated by 177 nucleotides
12707 and 12708 are separated by 423 nucleotides
12708 and 12709 are separated by 62 nucleotides
12709 and 12710 are separated by 498 nucleotides
mRNA_4338: 12706 - SUPERFAMILY--SSF53098, at 1,942,344 to 1,943,662
12706
mRNA_4339: 12707 - K17677 IRC3 ATP-dependent helicase IRC3, at 1,943,840 to 1,947,247
12707
mRNA_4340: 12708 - K01074 PPT palmitoyl-protein thioesterase, at 1,947,671 to 1,949,110
12708
mRNA_4341: 12709 - K08266 MLST8, GBL target of rapamycin complex subunit LST8, at 1,949,173 to 1,951,155
12709
mRNA_4342: 12710 - K08801 PASK PAS domain containing serine/threonine kinase, at 1,951,654 to 1,955,244
12710
Group
Condition
mRNA
_4338
mRNA
_4339
mRNA
_4340
mRNA
_4341
mRNA
_4342
12706
12707
12708
12709
12710
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
+0.1
-0.9
N.D.
+0.6
auxotrophy
YNB Glucose
-0.1
-0.1
-0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.0
-0.4
N.D.
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
+0.0
-0.5
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.0
-0.3
N.D.
-0.1
auxotrophy
Dropout Complete
-0.1
+0.1
-0.4
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
-0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
-0.0
-0.4
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-0.2
-0.6
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.0
+0.1
-0.3
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.3
+0.1
-0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
-0.2
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
-0.0
N.D.
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
-0.1
N.D.
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.5
+0.3
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.1
+0.2
N.D.
+0.4
growth on ypd
YPD
+0.7
-0.1
-0.3
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.3
+0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
+0.6
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.3
+0.1
N.D.
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.0
-0.4
N.D.
+0.5
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