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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12707 and 12708 are separated by 423 nucleotides
12708 and 12709 are separated by 62 nucleotides
12709 and 12710 are separated by 498 nucleotides
12710 and 12711 are separated by 498 nucleotides
mRNA_4339: 12707 - K17677 IRC3 ATP-dependent helicase IRC3, at 1,943,840 to 1,947,247
12707
mRNA_4340: 12708 - K01074 PPT palmitoyl-protein thioesterase, at 1,947,671 to 1,949,110
12708
mRNA_4341: 12709 - K08266 MLST8, GBL target of rapamycin complex subunit LST8, at 1,949,173 to 1,951,155
12709
mRNA_4342: 12710 - K08801 PASK PAS domain containing serine/threonine kinase, at 1,951,654 to 1,955,244
12710
mRNA_4343: 12711 - K15206 TFC7 transcription factor C subunit 7, at 1,955,743 to 1,957,166
12711
Group
Condition
mRNA
_4339
mRNA
_4340
mRNA
_4341
mRNA
_4342
mRNA
_4343
12707
12708
12709
12710
12711
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.5
N.D.
-0.3
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.6
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose
-0.1
-0.3
N.D.
-0.1
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
N.D.
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.9
N.D.
+0.6
-0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.2
N.D.
+0.1
-0.0
growth on ypd
YPD
-0.1
-0.3
N.D.
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
N.D.
-0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.2
N.D.
-0.0
+0.2
auxotrophy
Dropout Complete
+0.1
-0.4
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
+0.3
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
+0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.4
N.D.
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.4
N.D.
+0.0
+0.4
growth on oleic acid
YNB Glucose
+0.1
-0.5
N.D.
+0.1
+0.4
growth on oleic acid
YNB Oleic Acid
+0.1
-0.3
N.D.
+0.2
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
-0.0
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.2
N.D.
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
+0.1
N.D.
+0.2
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.2
N.D.
+0.4
+0.8
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.6
N.D.
+0.1
+0.9
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