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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12711 and 12712 are separated by 520 nucleotides
12712 and 12713 are separated by 590 nucleotides
12713 and 12714 are separated by 763 nucleotides
12714 and 12715 are separated by 496 nucleotides
mRNA_4343: 12711 - K15206 TFC7 transcription factor C subunit 7, at 1,955,743 to 1,957,166
12711
mRNA_4344: 12712 - HMMPfam-Secretory lipase-PF03583,SUPERFAMILY--SSF53474, at 1,957,687 to 1,959,260
12712
mRNA_4345: 12713 - K04706 PIAS1 E3 SUMO-protein ligase PIAS1, at 1,959,851 to 1,962,070
12713
mRNA_4346: 12714 - K18754 LIN28 protein lin-28, at 1,962,834 to 1,965,398
12714
mRNA_4347: 12715 - K03386 PRDX2_4, ahpC peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 1,965,895 to 1,967,093
12715
Group
Condition
mRNA
_4343
mRNA
_4344
mRNA
_4345
mRNA
_4346
mRNA
_4347
12711
12712
12713
12714
12715
auxotrophy
Dropout Complete
+0.1
-0.2
-2.0
+0.1
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.6
-2.1
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.0
-1.3
+0.0
-0.6
growth on oleic acid
YNB Oleic Acid
+0.1
-0.5
-0.4
+0.1
-1.1
auxotrophy
YNB Glucose
-0.0
-0.3
-0.5
-0.0
-1.0
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
+0.2
-0.4
-1.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.0
-0.9
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
+0.3
-1.5
-0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.3
+0.0
-0.1
-0.7
growth on ypd
YPD
+0.2
+0.4
-1.5
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.2
-0.4
+0.0
-0.8
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
-0.1
-0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
-0.4
+0.3
-0.7
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.2
-0.2
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
-0.9
+0.4
-0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
+0.0
-0.1
-0.3
growth on oleic acid
YNB Glucose
+0.4
-0.3
+0.2
+0.2
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.2
-0.1
-0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.2
+0.0
+0.3
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.6
-0.7
+0.0
-0.6
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
+0.4
-1.1
-0.0
-0.0
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