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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12713 and 12714 are separated by 763 nucleotides
12714 and 12715 are separated by 496 nucleotides
12715 and 12716 are separated by 442 nucleotides
12716 and 12717 are separated by 1108 nucleotides
mRNA_4345: 12713 - K04706 PIAS1 E3 SUMO-protein ligase PIAS1, at 1,959,851 to 1,962,070
12713
mRNA_4346: 12714 - K18754 LIN28 protein lin-28, at 1,962,834 to 1,965,398
12714
mRNA_4347: 12715 - K03386 PRDX2_4, ahpC peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 1,965,895 to 1,967,093
12715
mRNA_4348: 12716 - KOG2265 Nuclear distribution protein NUDC, at 1,967,536 to 1,968,862
12716
mRNA_4349: 12717 - K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e, at 1,969,971 to 1,971,273
12717
Group
Condition
mRNA
_4345
mRNA
_4346
mRNA
_4347
mRNA
_4348
mRNA
_4349
12713
12714
12715
12716
12717
auxotrophy
Dropout Complete
-2.0
+0.1
-0.5
N.D.
-0.7
auxotrophy
YNB Glucose
-0.5
-0.0
-1.0
N.D.
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.0
-0.8
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.5
-0.2
-0.5
N.D.
+0.8
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.3
-0.5
N.D.
-1.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.3
+0.0
-0.6
N.D.
+0.6
growth on ypd
YPD
-1.5
+0.1
-0.2
N.D.
+0.5
growth on ricinoleic acid
YNB Glucose
+0.2
-0.4
-1.0
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.3
-0.7
N.D.
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.1
-0.7
N.D.
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.3
N.D.
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-2.1
+0.1
+0.4
N.D.
+0.9
growth on oleic acid
YNB Oleic Acid
-0.4
+0.1
-1.1
N.D.
+0.9
facs on lipid accumulation
Sorted No BODIPY Gate
-0.9
+0.1
-0.3
N.D.
+0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.5
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
+0.0
-0.6
N.D.
+1.0
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.0
-0.0
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
-0.3
N.D.
+0.8
growth on oleic acid
YNB Glucose
+0.2
+0.2
-0.8
N.D.
+0.8
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.9
+0.4
-0.4
N.D.
+1.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.1
-0.0
-0.0
N.D.
+2.1
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