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Fitness for 4 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12715 and 12716 are separated by 442 nucleotides
12716 and 12717 are separated by 1108 nucleotides
12717 and 12718 are separated by 322 nucleotides
mRNA_4347: 12715 - K03386 PRDX2_4, ahpC peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 1,965,895 to 1,967,093
12715
mRNA_4348: 12716 - KOG2265 Nuclear distribution protein NUDC, at 1,967,536 to 1,968,862
12716
mRNA_4349: 12717 - K02873 RP-L13e, RPL13 large subunit ribosomal protein L13e, at 1,969,971 to 1,971,273
12717
mRNA_4350: 12718 - K03635 MOCS2, moaE molybdopterin synthase catalytic subunit, at 1,971,596 to 1,972,460
12718
Group
Condition
mRNA
_4347
mRNA
_4348
mRNA
_4349
mRNA
_4350
12715
12716
12717
12718
auxotrophy
YNB Glucose
-1.0
N.D.
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.8
N.D.
-0.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
-1.1
+0.3
auxotrophy
Dropout Complete
-0.5
N.D.
-0.7
+0.2
growth on ricinoleic acid
YNB Glucose
-1.0
N.D.
+0.2
+0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.7
N.D.
+0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.7
N.D.
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.3
N.D.
-0.3
+0.1
growth on oleic acid
YNB Oleic Acid
-1.1
N.D.
+0.9
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.5
N.D.
+0.3
+0.0
growth on oleic acid
YNB Glucose
-0.8
N.D.
+0.8
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
N.D.
+0.6
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
+0.6
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
N.D.
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
+0.8
+0.3
growth on ypd
YPD
-0.2
N.D.
+0.5
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
N.D.
+1.0
+0.4
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
+0.9
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
+1.7
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
N.D.
+2.1
+0.5
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