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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12728 and 12729 are separated by 1274 nucleotides
12729 and 12730 are separated by 1141 nucleotides
12730 and 12731 are separated by 639 nucleotides
12731 and 12732 are separated by 269 nucleotides
mRNA_4360: 12728 - Hypothetical Protein, at 964 to 3,087
12728
mRNA_4361: 12729 - K10576 UBE2H, UBC8 ubiquitin-conjugating enzyme E2 H, at 4,362 to 5,348
12729
mRNA_4362: 12730 - KOG0907 Thioredoxin, at 6,490 to 7,048
12730
mRNA_4363: 12731 - K19562 BIO3-BIO1 bifunctional dethiobiotin synthetase / adenosylmethionine---8-amino-7-oxononanoate aminotransferase, at 7,688 to 10,353
12731
mRNA_4364: 12732 - SUPERFAMILY--SSF48371, at 10,623 to 17,699
12732
Group
Condition
mRNA
_4360
mRNA
_4361
mRNA
_4362
mRNA
_4363
mRNA
_4364
12728
12729
12730
12731
12732
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.2
-0.4
N.D.
-1.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.5
-0.5
N.D.
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.8
-0.2
N.D.
+0.1
auxotrophy
YNB Glucose
-0.2
+0.2
+0.3
N.D.
-0.7
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.0
+0.2
N.D.
-0.5
growth on ricinoleic acid
YNB Glucose
-0.2
-0.2
+0.2
N.D.
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
+0.1
+0.1
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
-0.1
-0.0
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
+0.3
N.D.
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.5
+0.3
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.2
+0.2
N.D.
-0.2
growth on ypd
YPD
-0.1
+0.9
-0.4
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
+0.3
N.D.
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.4
+0.4
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.3
+0.3
N.D.
+0.8
auxotrophy
Dropout Complete
-0.1
+0.1
+0.0
N.D.
+0.6
growth on oleic acid
YNB Oleic Acid
+0.1
+0.2
+0.3
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
-0.6
+0.3
N.D.
+1.1
growth on oleic acid
YNB Glucose
+0.0
-0.1
+0.5
N.D.
+0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.3
+0.2
N.D.
+1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.4
+0.4
N.D.
+0.9
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