Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12730 and 12731 are separated by 639 nucleotides12731 and 12732 are separated by 269 nucleotides12732 and 12733 are separated by 1250 nucleotides12733 and 12734 are separated by 354 nucleotides mRNA_4362: 12730 - KOG0907 Thioredoxin, at 6,490 to 7,048 12730 mRNA_4363: 12731 - K19562 BIO3-BIO1 bifunctional dethiobiotin synthetase / adenosylmethionine---8-amino-7-oxononanoate aminotransferase, at 7,688 to 10,353 12731 mRNA_4364: 12732 - SUPERFAMILY--SSF48371, at 10,623 to 17,699 12732 mRNA_4365: 12733 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF13920, at 18,950 to 21,856 12733 mRNA_4366: 12734 - K11650 SMARCD SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D, at 22,211 to 24,480 12734
Group Condition mRNA_4362 mRNA_4363 mRNA_4364 mRNA_4365 mRNA_4366
12730 12731 12732 12733 12734
facs on lipid accumulation Sorted Low BODIPY Gate -0.4 N.D. -1.5 -0.5 N.D.
facs on lipid accumulation Sorted High BODIPY Gate -0.5 N.D. -0.0 -0.5 N.D.
facs on lipid accumulation Sorted No BODIPY Gate -0.2 N.D. +0.1 -0.6 N.D.
growth on ypd YPD -0.4 N.D. -0.2 -0.1 N.D.
auxotrophy YNB Glucose +0.3 N.D. -0.7 -0.1 N.D.
ypd buoyancy 40 hrs Median Buoyancy +0.1 N.D. -0.5 -0.1 N.D.
ypd buoyancy 40 hrs High Buoyancy +0.2 N.D. -0.5 +0.1 N.D.
ypd buoyancy 40 hrs Low Buoyancy +0.2 N.D. -0.2 -0.1 N.D.
growth on ricinoleic acid YNB Glucose +0.2 N.D. +0.0 -0.3 N.D.
auxotrophy YNB Glucose 75mM Arginine +0.1 N.D. -0.1 -0.1 N.D.
auxotrophy Dropout Complete +0.0 N.D. +0.6 -0.2 N.D.
ypd buoyancy 40 hrs No Buoyancy Separation +0.3 N.D. -0.3 +0.6 N.D.
auxotrophy YNB Glucose 75mM Methionine +0.3 N.D. +0.4 -0.0 N.D.
growth on oleic acid YNB Oleic Acid +0.3 N.D. +0.2 +0.3 N.D.
growth on ricinoleic acid YNB Ricinoleic Acid +0.4 N.D. +0.3 +0.2 N.D.
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 N.D. +0.4 +0.2 N.D.
growth on ricinoleic acid YNB Methylricinoleic Acid +0.2 N.D. +1.0 -0.1 N.D.
growth on oleic acid YNB Glucose +0.5 N.D. +0.5 +0.1 N.D.
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.3 N.D. +1.1 -0.2 N.D.
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.4 N.D. +0.9 -0.0 N.D.
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.3 N.D. +0.8 +0.4 N.D.
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