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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12734 and 12735 are separated by 78 nucleotides
12735 and 12736 are separated by 97 nucleotides
12736 and 12737 are separated by 1074 nucleotides
12737 and 12738 are separated by 405 nucleotides
mRNA_4366: 12734 - K11650 SMARCD SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D, at 22,211 to 24,480
12734
mRNA_4367: 12735 - K08856 STK16 serine/threonine kinase 16, at 24,559 to 26,572
12735
mRNA_4368: 12736 - K00652 bioF 8-amino-7-oxononanoate synthase, at 26,670 to 28,178
12736
mRNA_4369: 12737 - K03671 trxA thioredoxin 1, at 29,253 to 29,815
12737
mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30,221 to 32,027
12738
Group
Condition
mRNA
_4366
mRNA
_4367
mRNA
_4368
mRNA
_4369
mRNA
_4370
12734
12735
12736
12737
12738
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
-2.9
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.0
N.D.
-0.7
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
N.D.
-0.3
-0.2
auxotrophy
YNB Glucose
N.D.
+0.1
N.D.
-0.5
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.2
N.D.
-0.8
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
N.D.
+0.0
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.2
N.D.
-0.6
+0.1
auxotrophy
Dropout Complete
N.D.
+0.3
N.D.
+0.3
-0.8
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
N.D.
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.8
N.D.
-1.5
+0.5
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.1
N.D.
+0.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
N.D.
+0.5
-0.2
growth on ypd
YPD
N.D.
+0.3
N.D.
-0.5
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
N.D.
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.6
N.D.
-0.6
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
+0.5
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
N.D.
+0.8
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
N.D.
+0.4
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.7
N.D.
+0.2
+0.9
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