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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12736 and 12737 are separated by 1074 nucleotides
12737 and 12738 are separated by 405 nucleotides
12738 and 12739 are separated by 484 nucleotides
12739 and 12740 are separated by 3134 nucleotides
mRNA_4368: 12736 - K00652 bioF 8-amino-7-oxononanoate synthase, at 26,670 to 28,178
12736
mRNA_4369: 12737 - K03671 trxA thioredoxin 1, at 29,253 to 29,815
12737
mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30,221 to 32,027
12738
mRNA_4371: 12739 - K10877 RAD54B DNA repair and recombination protein RAD54B, at 32,512 to 35,317
12739
mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38,452 to 41,065
12740
Group
Condition
mRNA
_4368
mRNA
_4369
mRNA
_4370
mRNA
_4371
mRNA
_4372
12736
12737
12738
12739
12740
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-2.9
-0.0
+0.2
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
-0.4
-0.6
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.5
+0.5
+0.1
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.3
-0.2
-0.3
-0.2
growth on oleic acid
YNB Glucose
N.D.
-0.6
+0.1
-0.2
-0.2
growth on ypd
YPD
N.D.
-0.5
+0.6
-0.4
-0.4
auxotrophy
Dropout Complete
N.D.
+0.3
-0.8
+0.4
-0.4
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
-0.2
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
+0.0
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.4
+0.1
-0.0
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
-0.1
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.6
+0.6
+0.2
-0.4
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.8
+0.3
+0.2
+0.3
auxotrophy
YNB Glucose
N.D.
-0.5
-0.1
+0.3
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.2
+0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
-0.4
+0.5
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.2
+0.9
+0.0
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.5
+0.2
-0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.4
+0.7
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.8
+0.2
-0.1
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.8
-0.1
+0.4
+0.1
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