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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12738 and 12739 are separated by 484 nucleotides
12739 and 12740 are separated by 3134 nucleotides
12740 and 12741 are separated by 204 nucleotides
12741 and 12742 are separated by 141 nucleotides
mRNA_4370: 12738 - HMMPfam-Purine nucleoside permease (NUP)-PF06516,PIRSF--PIRSF013171, at 30,221 to 32,027
12738
mRNA_4371: 12739 - K10877 RAD54B DNA repair and recombination protein RAD54B, at 32,512 to 35,317
12739
mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38,452 to 41,065
12740
mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41,270 to 42,990
12741
mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43,132 to 46,033
12742
Group
Condition
mRNA
_4370
mRNA
_4371
mRNA
_4372
mRNA
_4373
mRNA
_4374
12738
12739
12740
12741
12742
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-0.6
-0.3
-0.3
-0.8
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
+0.3
+0.2
-2.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.1
+0.1
+0.5
-2.0
auxotrophy
Dropout Complete
-0.8
+0.4
-0.4
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.2
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.3
+0.0
-0.2
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.1
+0.3
-0.9
growth on oleic acid
YNB Glucose
+0.1
-0.2
-0.2
+0.1
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.2
-0.1
-0.3
-0.2
growth on ypd
YPD
+0.6
-0.4
-0.4
-0.4
+0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
+0.4
+0.1
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.0
-0.1
+0.0
-0.2
growth on ricinoleic acid
YNB Glucose
-0.2
-0.1
+0.1
+0.2
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
+0.1
-0.5
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.3
-0.2
-0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.5
+0.2
+0.0
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
+0.3
-0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+0.2
-0.4
-0.2
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
+0.0
-0.5
-0.1
-0.0
auxotrophy
YNB Glucose
-0.1
+0.3
+0.3
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
+0.3
+0.2
-0.1
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