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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12740 and 12741 are separated by 204 nucleotides
12741 and 12742 are separated by 141 nucleotides
12742 and 12743 are separated by 316 nucleotides
12743 and 12744 are separated by 431 nucleotides
mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38,452 to 41,065
12740
mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41,270 to 42,990
12741
mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43,132 to 46,033
12742
mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46,350 to 49,394
12743
mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49,826 to 51,100
12744
Group
Condition
mRNA
_4372
mRNA
_4373
mRNA
_4374
mRNA
_4375
mRNA
_4376
12740
12741
12742
12743
12744
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.2
-0.8
-0.6
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-0.3
-0.8
+0.4
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
-2.4
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.5
-2.0
-0.0
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
-0.1
-0.0
-0.3
-0.1
growth on ypd
YPD
-0.4
-0.4
+0.2
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.1
-0.2
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
-0.3
-0.2
+0.1
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.0
-0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
-0.2
+0.1
-0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.1
-0.5
+0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.0
-0.2
+0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.2
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.1
-0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.2
+0.2
-0.2
auxotrophy
Dropout Complete
-0.4
-0.1
+0.1
+0.2
+0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.0
-0.4
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.2
+0.1
-0.3
+0.1
+0.6
ypd buoyancy
40 hrs High Buoyancy
+0.3
+0.2
-0.1
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
+0.3
-0.9
+0.2
+0.8
auxotrophy
YNB Glucose
+0.3
+0.0
+0.0
+0.1
+0.1
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