Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12740 and 12741 are separated by 204 nucleotides12741 and 12742 are separated by 141 nucleotides12742 and 12743 are separated by 316 nucleotides12743 and 12744 are separated by 431 nucleotides mRNA_4372: 12740 - KOG2533 Permease of the major facilitator superfamily, at 38,452 to 41,065 12740 mRNA_4373: 12741 - SUPERFAMILY--SSF52058, at 41,270 to 42,990 12741 mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43,132 to 46,033 12742 mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46,350 to 49,394 12743 mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49,826 to 51,100 12744
Group Condition mRNA_4372 mRNA_4373 mRNA_4374 mRNA_4375 mRNA_4376
12740 12741 12742 12743 12744
ypd buoyancy 40 hrs No Buoyancy Separation -0.1 -0.3 -0.2 -0.8 -0.6
facs on lipid accumulation Sorted Low BODIPY Gate -0.3 -0.3 -0.8 +0.4 -0.7
growth on ricinoleic acid YNB Ricinoleic Acid +0.3 +0.2 -2.4 +0.0 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.5 -2.0 -0.0 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.5 -0.1 -0.0 -0.3 -0.1
growth on ypd YPD -0.4 -0.4 +0.2 -0.1 -0.1
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 -0.1 -0.2 -0.1 +0.1
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.3 -0.3 -0.2 +0.1 +0.3
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.0 -0.2 +0.0 -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.4 -0.2 +0.1 -0.0 +0.1
facs on lipid accumulation Sorted High BODIPY Gate +0.1 -0.1 -0.5 +0.2 -0.0
ypd buoyancy 40 hrs Low Buoyancy -0.3 +0.0 -0.2 +0.1 +0.0
facs on lipid accumulation Sorted No BODIPY Gate -0.2 +0.2 -0.2 +0.3 -0.3
auxotrophy YNB Glucose 75mM Arginine -0.2 -0.1 -0.1 +0.1 +0.1
growth on ricinoleic acid YNB Glucose +0.1 +0.2 -0.2 +0.2 -0.2
auxotrophy Dropout Complete -0.4 -0.1 +0.1 +0.2 +0.3
auxotrophy YNB Glucose 75mM Methionine +0.2 +0.0 -0.4 +0.1 +0.1
growth on oleic acid YNB Glucose -0.2 +0.1 -0.3 +0.1 +0.6
ypd buoyancy 40 hrs High Buoyancy +0.3 +0.2 -0.1 +0.1 -0.1
growth on oleic acid YNB Oleic Acid +0.1 +0.3 -0.9 +0.2 +0.8
auxotrophy YNB Glucose +0.3 +0.0 +0.0 +0.1 +0.1
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