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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12742 and 12743 are separated by 316 nucleotides
12743 and 12744 are separated by 431 nucleotides
12744 and 12745 are separated by 1415 nucleotides
12745 and 12746 are separated by 142 nucleotides
mRNA_4374: 12742 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 43,132 to 46,033
12742
mRNA_4375: 12743 - K14209 SLC36A, PAT solute carrier family 36 (proton-coupled amino acid transporter), at 46,350 to 49,394
12743
mRNA_4376: 12744 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 49,826 to 51,100
12744
mRNA_4377: 12745 - Hypothetical Protein, at 52,516 to 53,498
12745
mRNA_4378: 12746 - KOG2432 Uncharacterized conserved protein, at 53,641 to 56,318
12746
Group
Condition
mRNA
_4374
mRNA
_4375
mRNA
_4376
mRNA
_4377
mRNA
_4378
12742
12743
12744
12745
12746
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.4
+0.0
+0.2
+0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.0
-0.0
+0.2
+0.0
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.8
-0.6
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.8
+0.4
-0.7
-0.4
+0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.2
-0.2
-0.1
-0.6
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.1
-0.1
-0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
+0.0
-0.1
-0.1
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.3
-0.3
-0.3
+0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
+0.0
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-0.3
-0.1
-0.3
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.1
-0.3
+0.3
growth on ypd
YPD
+0.2
-0.1
-0.1
+0.1
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
+0.2
-0.0
-0.1
+0.4
growth on oleic acid
YNB Oleic Acid
-0.9
+0.2
+0.8
+0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.1
+0.1
+0.2
-0.1
auxotrophy
Dropout Complete
+0.1
+0.2
+0.3
-0.0
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
+0.1
-0.2
+0.1
auxotrophy
YNB Glucose
+0.0
+0.1
+0.1
+0.0
-0.1
growth on oleic acid
YNB Glucose
-0.3
+0.1
+0.6
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.1
+0.3
-0.0
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.1
-0.1
+0.4
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