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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12746 and 12747 are separated by 383 nucleotides
12747 and 12748 are separated by 315 nucleotides
12748 and 12749 are separated by 160 nucleotides
12749 and 12750 are separated by 343 nucleotides
mRNA_4378: 12746 - KOG2432 Uncharacterized conserved protein, at 53,641 to 56,318
12746
mRNA_4379: 12747 - KOG4359 Protein kinase C inhibitor-like protein, at 56,702 to 58,135
12747
mRNA_4380: 12748 - K00550 OPI3 methylene-fatty-acyl-phospholipid synthase, at 58,451 to 59,547
12748
mRNA_4381: 12749 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 59,708 to 61,504
12749
mRNA_4382: 12750 - Hypothetical Protein, at 61,848 to 63,283
12750
Group
Condition
mRNA
_4378
mRNA
_4379
mRNA
_4380
mRNA
_4381
mRNA
_4382
12746
12747
12748
12749
12750
auxotrophy
Dropout Complete
-0.4
-0.0
-3.1
+0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
-2.9
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-2.3
-0.0
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.0
-2.1
-0.1
+0.2
growth on ricinoleic acid
YNB Glucose
-0.6
+0.1
-2.1
+0.3
+0.3
auxotrophy
YNB Glucose
-0.1
+0.0
-1.8
+0.1
+0.1
growth on oleic acid
YNB Glucose
-0.1
-0.1
-1.6
-0.1
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.1
+0.0
-0.6
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
+0.1
-1.6
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.1
-1.8
+0.4
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.1
-1.6
+0.4
-0.0
growth on oleic acid
YNB Oleic Acid
-0.3
+0.3
-1.0
+0.6
+0.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.3
-0.1
-0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.0
-0.0
-0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-0.2
+0.1
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.0
-0.5
+0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-0.0
+0.0
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
+0.2
-1.0
+0.3
+0.3
growth on ypd
YPD
-0.2
-0.1
+0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.2
-0.7
+1.0
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
+0.3
-0.3
+0.7
+0.3
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