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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12749 and 12750 are separated by 343 nucleotides
12750 and 12751 are separated by 277 nucleotides
12751 and 12752 are separated by 321 nucleotides
12752 and 12753 are separated by 96 nucleotides
mRNA_4381: 12749 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 59,708 to 61,504
12749
mRNA_4382: 12750 - Hypothetical Protein, at 61,848 to 63,283
12750
mRNA_4383: 12751 - Hypothetical Protein, at 63,561 to 65,177
12751
mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65,499 to 68,176
12752
mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68,273 to 69,417
12753
Group
Condition
mRNA
_4381
mRNA
_4382
mRNA
_4383
mRNA
_4384
mRNA
_4385
12749
12750
12751
12752
12753
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.2
-1.4
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
+0.1
-0.6
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
-0.0
+0.0
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.2
+0.1
+0.1
+0.3
auxotrophy
YNB Glucose
+0.1
+0.1
-0.2
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.0
-0.2
+0.1
+0.4
growth on oleic acid
YNB Glucose
-0.1
+0.2
+0.0
-0.1
+0.3
growth on ypd
YPD
+0.1
+0.2
+0.3
-0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.0
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.1
+0.1
+0.2
+0.0
growth on ricinoleic acid
YNB Glucose
+0.3
+0.3
-0.3
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
+0.6
+0.0
+0.2
+0.1
-0.2
auxotrophy
Dropout Complete
+0.3
+0.1
+0.2
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
+0.3
-0.3
+0.1
+0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.0
+0.2
+0.3
+0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.2
-0.1
+0.2
+0.8
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.0
+0.4
-0.2
+0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
-0.0
+0.1
+0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.3
+0.2
+0.0
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+1.0
+0.4
+0.3
+0.1
+0.1
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