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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12752 and 12753 are separated by 96 nucleotides
12753 and 12754 are separated by 602 nucleotides
12754 and 12755 are separated by 355 nucleotides
12755 and 12756 are separated by 459 nucleotides
mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65,499 to 68,176
12752
mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68,273 to 69,417
12753
mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70,020 to 71,335
12754
mRNA_4387: 12755 - HMMPfam-Ctf8-PF09696, at 71,691 to 72,315
12755
mRNA_4388: 12756 - KOG2084 Predicted histone tail methylase containing SET domain, at 72,775 to 74,031
12756
Group
Condition
mRNA
_4384
mRNA
_4385
mRNA
_4386
mRNA
_4387
mRNA
_4388
12752
12753
12754
12755
12756
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.5
+0.4
-2.5
-0.7
auxotrophy
Dropout Complete
-0.1
+0.2
-0.5
-0.5
-0.9
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.0
-0.3
-0.6
-1.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
+0.5
-0.3
-0.6
-0.9
growth on ricinoleic acid
YNB Glucose
+0.1
+0.2
-0.1
-0.9
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.1
-0.1
-0.9
-0.5
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.1
-0.3
-0.0
-0.9
auxotrophy
YNB Glucose
+0.2
+0.1
-0.4
-0.3
-0.4
growth on ypd
YPD
-0.1
-0.1
-0.1
-0.5
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.8
+0.3
-1.5
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.1
-0.3
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
+0.2
+0.3
-0.8
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
+0.6
-0.8
-0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.4
+0.4
-0.8
-0.4
growth on oleic acid
YNB Glucose
-0.1
+0.3
-0.3
+0.0
+0.1
growth on oleic acid
YNB Oleic Acid
+0.1
-0.2
-0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.4
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.3
+0.7
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.0
+0.1
-0.0
+1.0
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.3
-0.2
+0.7
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.3
+0.2
+1.5
+0.9
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