Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 12759 and 12760 overlap by 4 nucleotides12760 and 12761 are separated by 892 nucleotides12761 and 12762 are separated by 201 nucleotides12762 and 12763 are separated by 505 nucleotides mRNA_4391: 12759 - Hypothetical Protein, at 79,565 to 80,188 12759 mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80,185 to 81,389 12760 mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82,282 to 84,844 12761 mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85,046 to 87,560 12762 mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88,066 to 89,251 12763
Group Condition mRNA_4391 mRNA_4392 mRNA_4393 mRNA_4394 mRNA_4395
12759 12760 12761 12762 12763
ypd buoyancy 40 hrs No Buoyancy Separation -0.7 -0.7 +0.1 -0.2 -0.6
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation -0.5 +0.2 -0.7 +0.3 -0.6
facs on lipid accumulation Sorted High BODIPY Gate -0.8 +0.9 +0.2 -0.3 -1.2
growth on oleic acid YNB Oleic Acid +0.3 -0.0 -0.5 +0.1 +0.2
buoyancy on lipid accumulation 40 hrs Low Buoyancy +0.0 +1.0 -0.4 -0.2 -0.5
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.3 +1.2 -0.1 +0.1 -0.7
buoyancy on lipid accumulation 40 hrs Median Buoyancy -0.1 +1.3 -0.3 +0.3 -0.9
ypd buoyancy 40 hrs High Buoyancy -0.5 +0.5 +0.3 -0.1 +0.3
ypd buoyancy 40 hrs Low Buoyancy +0.2 +0.3 +0.1 +0.2 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate +0.8 -0.4 +0.2 -0.5 +0.4
auxotrophy YNB Glucose 75mM Methionine +0.0 -0.3 -0.3 +0.4 +0.7
growth on ricinoleic acid YNB Glucose -0.3 +0.1 +0.1 +0.2 +0.5
facs on lipid accumulation Sorted No BODIPY Gate +0.4 -0.2 +0.2 +0.1 +0.2
growth on ricinoleic acid YNB Methylricinoleic Acid -0.6 +0.4 +0.1 +0.1 +0.7
growth on ypd YPD +0.8 +0.3 +0.2 -0.3 -0.0
ypd buoyancy 40 hrs Median Buoyancy +0.1 -0.1 +0.5 -0.1 +0.5
auxotrophy Dropout Complete +0.2 -0.1 -0.1 +0.3 +1.2
auxotrophy YNB Glucose 75mM Arginine +0.4 +0.0 -0.0 +0.0 +1.1
growth on ricinoleic acid YNB Ricinoleic Acid +0.2 +0.6 +0.3 -0.1 +0.8
auxotrophy YNB Glucose +0.1 -0.0 -0.1 +0.6 +1.3
growth on oleic acid YNB Glucose +0.1 +0.5 +0.1 +0.2 +1.3
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