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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12759 and 12760 overlap by 4 nucleotides
12760 and 12761 are separated by 892 nucleotides
12761 and 12762 are separated by 201 nucleotides
12762 and 12763 are separated by 505 nucleotides
mRNA_4391: 12759 - Hypothetical Protein, at 79,565 to 80,188
12759
mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80,185 to 81,389
12760
mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82,282 to 84,844
12761
mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85,046 to 87,560
12762
mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88,066 to 89,251
12763
Group
Condition
mRNA
_4391
mRNA
_4392
mRNA
_4393
mRNA
_4394
mRNA
_4395
12759
12760
12761
12762
12763
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
-0.7
+0.1
-0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.2
-0.7
+0.3
-0.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.8
+0.9
+0.2
-0.3
-1.2
growth on oleic acid
YNB Oleic Acid
+0.3
-0.0
-0.5
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
+1.0
-0.4
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+1.2
-0.1
+0.1
-0.7
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+1.3
-0.3
+0.3
-0.9
ypd buoyancy
40 hrs High Buoyancy
-0.5
+0.5
+0.3
-0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.2
+0.3
+0.1
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.8
-0.4
+0.2
-0.5
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.0
-0.3
-0.3
+0.4
+0.7
growth on ricinoleic acid
YNB Glucose
-0.3
+0.1
+0.1
+0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
+0.4
-0.2
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.4
+0.1
+0.1
+0.7
growth on ypd
YPD
+0.8
+0.3
+0.2
-0.3
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.5
-0.1
+0.5
auxotrophy
Dropout Complete
+0.2
-0.1
-0.1
+0.3
+1.2
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.0
-0.0
+0.0
+1.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.6
+0.3
-0.1
+0.8
auxotrophy
YNB Glucose
+0.1
-0.0
-0.1
+0.6
+1.3
growth on oleic acid
YNB Glucose
+0.1
+0.5
+0.1
+0.2
+1.3
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