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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12760 and 12761 are separated by 892 nucleotides
12761 and 12762 are separated by 201 nucleotides
12762 and 12763 are separated by 505 nucleotides
12763 and 12764 are separated by 221 nucleotides
mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80,185 to 81,389
12760
mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82,282 to 84,844
12761
mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85,046 to 87,560
12762
mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88,066 to 89,251
12763
mRNA_4396: 12764 - BLAST NAD(P)-dependent alcohol dehydrogenase [Mycena chloro..., at 89,473 to 89,864
12764
Group
Condition
mRNA
_4392
mRNA
_4393
mRNA
_4394
mRNA
_4395
mRNA
_4396
12760
12761
12762
12763
12764
ypd buoyancy
40 hrs No Buoyancy Separation
-0.7
+0.1
-0.2
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
-0.7
+0.3
-0.6
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.9
+0.2
-0.3
-1.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-0.5
+0.4
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
-0.5
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+1.0
-0.4
-0.2
-0.5
N.D.
growth on ypd
YPD
+0.3
+0.2
-0.3
-0.0
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.3
+0.1
+0.2
-0.2
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.3
-0.3
+0.3
-0.9
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.3
+0.4
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.2
-0.1
+0.1
-0.7
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
-0.1
+0.5
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.5
+0.3
-0.1
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.1
+0.1
+0.2
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.0
-0.0
+0.0
+1.1
N.D.
auxotrophy
Dropout Complete
-0.1
-0.1
+0.3
+1.2
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
+0.1
+0.1
+0.7
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
+0.3
-0.1
+0.8
N.D.
auxotrophy
YNB Glucose
-0.0
-0.1
+0.6
+1.3
N.D.
growth on oleic acid
YNB Glucose
+0.5
+0.1
+0.2
+1.3
N.D.
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