Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12762 and 12763 are separated by 505 nucleotides12763 and 12764 are separated by 221 nucleotides12764 and 12765 are separated by 150 nucleotides12765 and 12766 are separated by 387 nucleotides mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85,046 to 87,560 12762 mRNA_4395: 12763 - HMMPfam-RTA1 like protein-PF04479, at 88,066 to 89,251 12763 mRNA_4396: 12764 - BLAST NAD(P)-dependent alcohol dehydrogenase [Mycena chloro..., at 89,473 to 89,864 12764 mRNA_4397: 12765 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129, at 90,015 to 90,968 12765 mRNA_4398: 12766 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 91,356 to 92,891 12766
Group Condition mRNA_4394 mRNA_4395 mRNA_4396 mRNA_4397 mRNA_4398
12762 12763 12764 12765 12766
facs on lipid accumulation Sorted High BODIPY Gate -0.3 -1.2 N.D. N.D. +0.1
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.2 -0.5 N.D. N.D. -0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.3 -0.9 N.D. N.D. +0.1
growth on ypd YPD -0.3 -0.0 N.D. N.D. -0.1
buoyancy on lipid accumulation 40 hrs High Buoyancy +0.1 -0.7 N.D. N.D. +0.2
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.6 N.D. N.D. +0.5
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.3 -0.6 N.D. N.D. +0.0
growth on oleic acid YNB Oleic Acid +0.1 +0.2 N.D. N.D. -0.4
facs on lipid accumulation Sorted Low BODIPY Gate -0.5 +0.4 N.D. N.D. +0.2
growth on ricinoleic acid YNB Glucose +0.2 +0.5 N.D. N.D. -0.3
ypd buoyancy 40 hrs High Buoyancy -0.1 +0.3 N.D. N.D. +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 +0.7 N.D. N.D. -0.2
facs on lipid accumulation Sorted No BODIPY Gate +0.1 +0.2 N.D. N.D. +0.3
ypd buoyancy 40 hrs Low Buoyancy +0.2 -0.2 N.D. N.D. +0.8
growth on ricinoleic acid YNB Ricinoleic Acid -0.1 +0.8 N.D. N.D. +0.0
growth on oleic acid YNB Glucose +0.2 +1.3 N.D. N.D. -0.7
auxotrophy YNB Glucose 75mM Arginine +0.0 +1.1 N.D. N.D. -0.2
ypd buoyancy 40 hrs Median Buoyancy -0.1 +0.5 N.D. N.D. +0.5
auxotrophy Dropout Complete +0.3 +1.2 N.D. N.D. -0.3
auxotrophy YNB Glucose 75mM Methionine +0.4 +0.7 N.D. N.D. +0.2
auxotrophy YNB Glucose +0.6 +1.3 N.D. N.D. +0.1
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