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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12764 and 12765 are separated by 150 nucleotides
12765 and 12766 are separated by 387 nucleotides
12766 and 12767 are separated by 811 nucleotides
12767 and 12768 are separated by 569 nucleotides
mRNA_4396: 12764 - BLAST NAD(P)-dependent alcohol dehydrogenase [Mycena chloro..., at 89,473 to 89,864
12764
mRNA_4397: 12765 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129, at 90,015 to 90,968
12765
mRNA_4398: 12766 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 91,356 to 92,891
12766
mRNA_4399: 12767 - HMMPfam-CFEM domain-PF05730, at 93,703 to 94,660
12767
mRNA_4400: 12768 - Hypothetical Protein, at 95,230 to 97,148
12768
Group
Condition
mRNA
_4396
mRNA
_4397
mRNA
_4398
mRNA
_4399
mRNA
_4400
12764
12765
12766
12767
12768
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.7
-0.0
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.2
-0.4
-0.7
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.4
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.4
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.2
+0.2
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
-0.3
+0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.0
+0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.2
+0.0
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.1
-0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.4
-0.0
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.0
+0.3
-0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
-0.1
+0.4
auxotrophy
Dropout Complete
N.D.
N.D.
-0.3
+0.1
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
-0.1
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.5
-0.0
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.1
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
+0.5
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.5
+0.3
-0.3
growth on ypd
YPD
N.D.
N.D.
-0.1
+0.8
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.8
+0.3
-0.1
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