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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12768 and 12769 are separated by 574 nucleotides
12769 and 12770 are separated by 119 nucleotides
12770 and 12771 are separated by 249 nucleotides
12771 and 12772 are separated by 365 nucleotides
mRNA_4400: 12768 - Hypothetical Protein, at 95,230 to 97,148
12768
mRNA_4401: 12769 - KOG3303 Predicted alpha-helical protein, potentially involved in replication/repair, at 97,723 to 98,507
12769
mRNA_4402: 12770 - Hypothetical Protein, at 98,627 to 98,893
12770
mRNA_4403: 12771 - Hypothetical Protein, at 99,143 to 102,687
12771
mRNA_4404: 12772 - HMMPfam-Fatty acid hydroxylase superfamily-PF04116, at 103,053 to 104,397
12772
Group
Condition
mRNA
_4400
mRNA
_4401
mRNA
_4402
mRNA
_4403
mRNA
_4404
12768
12769
12770
12771
12772
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-0.4
+0.2
-1.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
N.D.
-0.4
+0.5
-1.7
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
N.D.
+0.0
+0.3
-1.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
N.D.
-0.4
+0.1
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
N.D.
-0.7
-0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.1
N.D.
-0.3
+0.1
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
N.D.
-0.3
+0.4
-0.4
growth on ricinoleic acid
YNB Glucose
-0.1
N.D.
-0.3
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.4
N.D.
-0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
N.D.
+0.0
+0.0
-0.4
growth on ypd
YPD
-0.1
N.D.
-0.1
-0.0
-0.2
growth on oleic acid
YNB Glucose
-0.3
N.D.
-0.3
+0.3
-0.1
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.4
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.4
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
+0.3
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
N.D.
-0.0
+0.1
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.3
N.D.
-0.1
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
N.D.
-0.2
+0.2
-0.3
auxotrophy
Dropout Complete
+0.4
N.D.
-0.5
+0.1
+0.1
auxotrophy
YNB Glucose
+0.3
N.D.
-0.2
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
-0.3
+0.2
-0.0
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