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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12769 and 12770 are separated by 119 nucleotides
12770 and 12771 are separated by 249 nucleotides
12771 and 12772 are separated by 365 nucleotides
12772 and 12773 are separated by 700 nucleotides
mRNA_4401: 12769 - KOG3303 Predicted alpha-helical protein, potentially involved in replication/repair, at 97,723 to 98,507
12769
mRNA_4402: 12770 - Hypothetical Protein, at 98,627 to 98,893
12770
mRNA_4403: 12771 - Hypothetical Protein, at 99,143 to 102,687
12771
mRNA_4404: 12772 - HMMPfam-Fatty acid hydroxylase superfamily-PF04116, at 103,053 to 104,397
12772
mRNA_4405: 12773 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 105,098 to 106,781
12773
Group
Condition
mRNA
_4401
mRNA
_4402
mRNA
_4403
mRNA
_4404
mRNA
_4405
12769
12770
12771
12772
12773
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
+0.2
-1.7
-0.0
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.4
+0.5
-1.7
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.7
-0.1
+0.0
+0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
+0.1
-0.5
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.0
+0.0
-0.4
-0.1
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.0
+0.1
-0.3
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.3
-0.3
+0.1
growth on ypd
YPD
N.D.
-0.1
-0.0
-0.2
+0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.2
+0.2
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
-0.1
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.4
+0.1
-0.1
+0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-0.3
+0.1
-0.2
+0.6
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
+0.4
-0.4
+0.5
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.3
-0.1
+0.3
auxotrophy
Dropout Complete
N.D.
-0.5
+0.1
+0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.0
+0.3
-1.0
+1.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.3
+0.2
-0.0
+0.5
auxotrophy
YNB Glucose
N.D.
-0.2
+0.2
-0.1
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
+0.4
-0.1
+1.0
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