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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12771 and 12772 are separated by 365 nucleotides
12772 and 12773 are separated by 700 nucleotides
12773 and 12774 are separated by 73 nucleotides
12774 and 12775 are separated by 150 nucleotides
mRNA_4403: 12771 - Hypothetical Protein, at 99,143 to 102,687
12771
mRNA_4404: 12772 - HMMPfam-Fatty acid hydroxylase superfamily-PF04116, at 103,053 to 104,397
12772
mRNA_4405: 12773 - K05925 METTL3_14 mRNA (2'-O-methyladenosine-N6-)-methyltransferase, at 105,098 to 106,781
12773
mRNA_4406: 12774 - KOG2100 Dipeptidyl aminopeptidase, at 106,855 to 109,155
12774
mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109,306 to 110,822
12775
Group
Condition
mRNA
_4403
mRNA
_4404
mRNA
_4405
mRNA
_4406
mRNA
_4407
12771
12772
12773
12774
12775
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
-1.7
-0.0
+0.0
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.4
-0.1
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
+0.0
+0.1
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.2
+0.0
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.5
-1.7
+0.3
+0.7
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.3
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.5
+0.0
+0.1
-0.0
growth on ypd
YPD
-0.0
-0.2
+0.2
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
+0.0
+0.1
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
-1.0
+1.0
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
-0.3
+0.1
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
-0.1
+0.5
-0.1
-0.2
growth on ricinoleic acid
YNB Glucose
+0.1
-0.2
+0.6
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.2
-0.3
+0.3
+0.4
-0.0
growth on oleic acid
YNB Glucose
+0.3
-0.1
+0.3
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.4
+0.5
-0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
+0.3
+0.3
+0.1
auxotrophy
YNB Glucose
+0.2
-0.1
+0.6
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.2
-0.0
+0.5
+0.4
-0.0
auxotrophy
Dropout Complete
+0.1
+0.1
+0.5
+0.4
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.4
-0.1
+1.0
+0.1
-0.0
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