Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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Top 21 experiments (either direction), sorted by average fitness

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500 nt 12774 and 12775 are separated by 150 nucleotides12775 and 12776 are separated by 384 nucleotides12776 and 12777 are separated by 421 nucleotides12777 and 12778 are separated by 310 nucleotides mRNA_4406: 12774 - KOG2100 Dipeptidyl aminopeptidase, at 106,855 to 109,155 12774 mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109,306 to 110,822 12775 mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111,207 to 112,706 12776 mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113,128 to 114,818 12777 mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115,129 to 117,248 12778
Group Condition mRNA_4406 mRNA_4407 mRNA_4408 mRNA_4409 mRNA_4410
12774 12775 12776 12777 12778
facs on lipid accumulation Sorted High BODIPY Gate +0.0 -0.2 -0.5 -0.2 -0.1
growth on ricinoleic acid YNB Glucose +0.1 -0.1 -0.5 +0.0 +0.0
ypd buoyancy 40 hrs High Buoyancy +0.0 -0.2 -0.2 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation +0.1 -0.3 -0.7 +0.2 +0.3
facs on lipid accumulation Sorted Low BODIPY Gate -0.1 -0.3 +0.0 -0.3 +0.3
buoyancy on lipid accumulation 40 hrs Low Buoyancy -0.1 -0.2 +0.0 -0.2 +0.2
buoyancy on lipid accumulation 40 hrs High Buoyancy -0.1 -0.3 -0.2 +0.0 +0.4
growth on oleic acid YNB Oleic Acid -0.2 +0.2 -0.6 +0.1 +0.4
growth on ricinoleic acid YNB Methylricinoleic Acid +0.1 -0.0 -0.1 -0.1 -0.0
auxotrophy YNB Glucose 75mM Arginine +0.4 -0.0 -0.6 -0.1 +0.2
growth on ricinoleic acid YNB Ricinoleic Acid -0.0 +0.4 -0.1 -0.2 -0.1
ypd buoyancy 40 hrs No Buoyancy Separation -0.2 -0.5 -0.1 +0.5 +0.3
ypd buoyancy 40 hrs Median Buoyancy +0.3 +0.1 -0.6 -0.0 +0.2
auxotrophy YNB Glucose 75mM Methionine +0.4 -0.0 +0.0 -0.2 -0.0
ypd buoyancy 40 hrs Low Buoyancy +0.1 -0.0 -0.0 -0.1 +0.2
buoyancy on lipid accumulation 40 hrs Median Buoyancy +0.0 -0.1 +0.0 -0.1 +0.3
growth on oleic acid YNB Glucose -0.1 +0.1 -0.4 +0.3 +0.2
growth on ypd YPD +0.0 -0.1 +0.6 -0.2 +0.0
auxotrophy YNB Glucose +0.4 -0.1 +0.6 +0.1 -0.2
auxotrophy Dropout Complete +0.4 -0.0 +0.5 +0.3 -0.1
facs on lipid accumulation Sorted No BODIPY Gate +0.7 -0.1 +0.4 +0.2 +0.3
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