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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12774 and 12775 are separated by 150 nucleotides
12775 and 12776 are separated by 384 nucleotides
12776 and 12777 are separated by 421 nucleotides
12777 and 12778 are separated by 310 nucleotides
mRNA_4406: 12774 - KOG2100 Dipeptidyl aminopeptidase, at 106,855 to 109,155
12774
mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109,306 to 110,822
12775
mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111,207 to 112,706
12776
mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113,128 to 114,818
12777
mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115,129 to 117,248
12778
Group
Condition
mRNA
_4406
mRNA
_4407
mRNA
_4408
mRNA
_4409
mRNA
_4410
12774
12775
12776
12777
12778
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
-0.5
-0.2
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.5
+0.0
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
-0.2
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
-0.7
+0.2
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
-0.3
+0.0
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.2
+0.0
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
-0.2
+0.0
+0.4
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
-0.6
+0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.0
-0.1
-0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.4
-0.0
-0.6
-0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.4
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.5
-0.1
+0.5
+0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.1
-0.6
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.4
-0.0
+0.0
-0.2
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.0
-0.0
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
+0.0
-0.1
+0.3
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.4
+0.3
+0.2
growth on ypd
YPD
+0.0
-0.1
+0.6
-0.2
+0.0
auxotrophy
YNB Glucose
+0.4
-0.1
+0.6
+0.1
-0.2
auxotrophy
Dropout Complete
+0.4
-0.0
+0.5
+0.3
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.7
-0.1
+0.4
+0.2
+0.3
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