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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12775 and 12776 are separated by 384 nucleotides
12776 and 12777 are separated by 421 nucleotides
12777 and 12778 are separated by 310 nucleotides
12778 and 12779 are separated by 384 nucleotides
mRNA_4407: 12775 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 109,306 to 110,822
12775
mRNA_4408: 12776 - HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 111,207 to 112,706
12776
mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113,128 to 114,818
12777
mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115,129 to 117,248
12778
mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117,633 to 120,365
12779
Group
Condition
mRNA
_4407
mRNA
_4408
mRNA
_4409
mRNA
_4410
mRNA
_4411
12775
12776
12777
12778
12779
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.5
-0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.5
+0.0
+0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.6
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.7
+0.2
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
-0.2
-0.2
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.6
-0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.0
-0.2
-0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.0
-0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.1
-0.1
-0.0
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.2
+0.0
+0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.0
-0.2
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
-0.1
-0.2
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.6
+0.1
+0.4
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.0
-0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.0
-0.1
+0.3
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
-0.1
+0.5
+0.3
N.D.
growth on ypd
YPD
-0.1
+0.6
-0.2
+0.0
N.D.
growth on oleic acid
YNB Glucose
+0.1
-0.4
+0.3
+0.2
N.D.
auxotrophy
YNB Glucose
-0.1
+0.6
+0.1
-0.2
N.D.
auxotrophy
Dropout Complete
-0.0
+0.5
+0.3
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.4
+0.2
+0.3
N.D.
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