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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12777 and 12778 are separated by 310 nucleotides
12778 and 12779 are separated by 384 nucleotides
12779 and 12780 are separated by 76 nucleotides
12780 and 12781 are separated by 132 nucleotides
mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113,128 to 114,818
12777
mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115,129 to 117,248
12778
mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117,633 to 120,365
12779
mRNA_4412: 12780 - SUPERFAMILY--SSF52047, at 120,442 to 126,387
12780
mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126,520 to 129,077
12781
Group
Condition
mRNA
_4409
mRNA
_4410
mRNA
_4411
mRNA
_4412
mRNA
_4413
12777
12778
12779
12780
12781
growth on ypd
YPD
-0.2
+0.0
N.D.
+0.1
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.2
-0.1
N.D.
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.0
N.D.
-0.1
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.0
N.D.
+0.0
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.2
N.D.
+0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
-0.1
N.D.
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.0
+0.0
N.D.
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.2
N.D.
+0.0
-0.1
auxotrophy
YNB Glucose
+0.1
-0.2
N.D.
+0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
+0.2
N.D.
+0.0
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.3
N.D.
-0.2
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
+0.3
N.D.
+0.2
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
N.D.
+0.1
+0.0
auxotrophy
Dropout Complete
+0.3
-0.1
N.D.
+0.0
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+0.4
N.D.
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
+0.3
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.2
N.D.
+0.2
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.3
N.D.
+0.1
-0.1
growth on oleic acid
YNB Glucose
+0.3
+0.2
N.D.
+0.1
+0.3
ypd buoyancy
40 hrs No Buoyancy Separation
+0.5
+0.3
N.D.
+0.1
-0.0
growth on oleic acid
YNB Oleic Acid
+0.1
+0.4
N.D.
+0.1
+0.3
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