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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12779 and 12780 are separated by 76 nucleotides
12780 and 12781 are separated by 132 nucleotides
12781 and 12782 are separated by 725 nucleotides
12782 and 12783 are separated by 852 nucleotides
mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117,633 to 120,365
12779
mRNA_4412: 12780 - SUPERFAMILY--SSF52047, at 120,442 to 126,387
12780
mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126,520 to 129,077
12781
mRNA_4414: 12782 - BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [..., at 129,803 to 130,566
12782
mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131,419 to 134,157
12783
Group
Condition
mRNA
_4411
mRNA
_4412
mRNA
_4413
mRNA
_4414
mRNA
_4415
12779
12780
12781
12782
12783
growth on ypd
YPD
N.D.
+0.1
-0.2
-0.6
+0.0
growth on ricinoleic acid
YNB Glucose
N.D.
+0.1
-0.2
-0.3
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.0
-0.1
-0.3
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.1
-0.1
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.0
-0.3
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.0
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.1
-0.1
+0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.2
+0.3
+0.4
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.3
+0.4
+0.0
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.3
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
+0.0
+0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.0
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.0
-0.1
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.1
+0.3
+0.0
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.1
+0.2
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.1
-0.3
+0.4
+0.3
auxotrophy
YNB Glucose
N.D.
+0.1
+0.1
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
-0.3
+0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
-0.3
+0.8
+0.0
auxotrophy
Dropout Complete
N.D.
+0.0
-0.0
+0.7
-0.0
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