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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12781 and 12782 are separated by 725 nucleotides
12782 and 12783 are separated by 852 nucleotides
12783 and 12784 are separated by 350 nucleotides
12784 and 12785 are separated by 425 nucleotides
mRNA_4413: 12781 - KOG0252 Inorganic phosphate transporter, at 126,520 to 129,077
12781
mRNA_4414: 12782 - BLAST DiGeorge syndrome critical region 6 (DGCR6) protein [..., at 129,803 to 130,566
12782
mRNA_4415: 12783 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF81383, at 131,419 to 134,157
12783
mRNA_4416: 12784 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 134,508 to 136,011
12784
mRNA_4417: 12785 - Hypothetical Protein, at 136,437 to 137,903
12785
Group
Condition
mRNA
_4413
mRNA
_4414
mRNA
_4415
mRNA
_4416
mRNA
_4417
12781
12782
12783
12784
12785
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.2
-0.5
-1.0
growth on ricinoleic acid
YNB Glucose
-0.2
-0.3
-0.2
-0.4
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
-0.2
-0.1
-1.0
growth on ypd
YPD
-0.2
-0.6
+0.0
-0.0
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-0.3
-0.1
-0.0
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
-0.0
-0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.3
-0.1
-0.3
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.1
-0.2
+0.3
auxotrophy
YNB Glucose
+0.1
+0.3
+0.1
-0.5
-0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
+0.4
+0.0
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.5
-0.1
-0.3
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.3
+0.1
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.6
-0.2
-0.2
-0.2
growth on oleic acid
YNB Glucose
+0.3
-0.2
+0.1
+0.2
-0.3
auxotrophy
Dropout Complete
-0.0
+0.7
-0.0
-0.4
-0.1
growth on oleic acid
YNB Oleic Acid
+0.3
+0.0
-0.1
+0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
+0.3
+0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.3
+0.4
-0.2
-0.0
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
+0.1
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.6
+0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.8
+0.0
+0.1
-0.1
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