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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12786 and 12787 are separated by 322 nucleotides
12787 and 12788 are separated by 599 nucleotides
12788 and 12789 are separated by 125 nucleotides
12789 and 12790 are separated by 95 nucleotides
mRNA_4418: 12786 - KOG3683 Uncharacterized conserved protein, at 138,075 to 139,542
12786
mRNA_4419: 12787 - K11121 SIR2 NAD-dependent histone deacetylase SIR2, at 139,865 to 142,182
12787
mRNA_4420: 12788 - Hypothetical Protein, at 142,782 to 144,296
12788
mRNA_4421: 12789 - K17765 MDM12 mitochondrial distribution and morphology protein 12, at 144,422 to 145,671
12789
mRNA_4422: 12790 - BLAST Regulator of nonsense transcripts UPF2 [Grifola frond..., at 145,767 to 149,805
12790
Group
Condition
mRNA
_4418
mRNA
_4419
mRNA
_4420
mRNA
_4421
mRNA
_4422
12786
12787
12788
12789
12790
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-1.8
+0.1
N.D.
-0.8
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.7
+0.1
N.D.
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
-1.3
+0.1
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-1.3
-0.2
-0.4
N.D.
+0.8
auxotrophy
Dropout Complete
+0.0
-0.6
+0.1
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
-0.2
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.3
-0.1
N.D.
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.2
+0.0
N.D.
-0.4
auxotrophy
YNB Glucose
+0.2
+0.0
+0.1
N.D.
-0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
+0.3
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.3
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+1.0
-0.2
N.D.
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.8
-0.2
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
-0.2
+0.8
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.2
+0.2
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.7
-0.2
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
+0.1
+0.1
N.D.
+0.3
growth on oleic acid
YNB Glucose
+0.3
+0.4
-0.0
N.D.
-0.3
growth on ypd
YPD
-0.4
+0.6
-0.2
N.D.
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.1
+0.1
N.D.
-0.1
growth on oleic acid
YNB Oleic Acid
+0.6
+0.2
+0.1
N.D.
-0.2
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