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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12795 and 12796 are separated by 380 nucleotides
12796 and 12797 are separated by 517 nucleotides
12797 and 12798 are separated by 389 nucleotides
12798 and 12799 are separated by 247 nucleotides
mRNA_4427: 12795 - K11539 CBR4 carbonyl reductase 4, at 160,068 to 161,346
12795
mRNA_4428: 12796 - Hypothetical Protein, at 161,727 to 164,031
12796
mRNA_4429: 12797 - HMMPfam-GDP-fucose protein O-fucosyltransferase-PF10250, at 164,549 to 166,627
12797
mRNA_4430: 12798 - KOG0322 G-protein beta subunit-like protein GNB1L, contains WD repeats, at 167,017 to 168,895
12798
mRNA_4431: 12799 - Hypothetical Protein, at 169,143 to 170,784
12799
Group
Condition
mRNA
_4427
mRNA
_4428
mRNA
_4429
mRNA
_4430
mRNA
_4431
12795
12796
12797
12798
12799
growth on ricinoleic acid
YNB Glucose
-0.4
-0.1
-0.0
N.D.
-0.7
ypd buoyancy
40 hrs High Buoyancy
-0.5
-0.2
+0.1
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.2
-0.1
N.D.
-0.4
growth on ypd
YPD
-0.2
+0.0
-0.0
N.D.
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.4
+0.1
+0.1
N.D.
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.2
-0.0
N.D.
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
+0.1
+0.1
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.1
+0.2
N.D.
-0.1
auxotrophy
YNB Glucose
-0.3
-0.0
+0.1
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
-0.2
+0.4
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.1
+0.1
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.3
-0.0
+0.2
N.D.
-0.3
auxotrophy
Dropout Complete
-0.2
+0.1
+0.0
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.0
+0.2
N.D.
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.1
+0.3
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-0.0
+0.1
N.D.
+0.6
facs on lipid accumulation
Sorted High BODIPY Gate
+0.3
-0.1
+0.1
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.2
+0.5
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.5
-0.0
+0.0
N.D.
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
+0.3
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
+0.3
+0.4
N.D.
-0.1
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