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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12798 and 12799 are separated by 247 nucleotides
12799 and 12800 are separated by 1294 nucleotides
12800 and 12801 are separated by 422 nucleotides
12801 and 12802 are separated by 665 nucleotides
mRNA_4430: 12798 - KOG0322 G-protein beta subunit-like protein GNB1L, contains WD repeats, at 167,017 to 168,895
12798
mRNA_4431: 12799 - Hypothetical Protein, at 169,143 to 170,784
12799
mRNA_4432: 12800 - Hypothetical Protein, at 172,079 to 172,706
12800
mRNA_4433: 12801 - Hypothetical Protein, at 173,129 to 173,293
12801
mRNA_4434: 12802 - Hypothetical Protein, at 173,959 to 175,087
12802
Group
Condition
mRNA
_4430
mRNA
_4431
mRNA
_4432
mRNA
_4433
mRNA
_4434
12798
12799
12800
12801
12802
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.3
-0.2
N.D.
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
-0.1
N.D.
-0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.7
+0.1
N.D.
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
-1.0
N.D.
+0.3
growth on ypd
YPD
N.D.
-0.3
-0.1
N.D.
+0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.1
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.1
N.D.
-0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.2
N.D.
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.0
N.D.
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.2
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.1
N.D.
-0.0
auxotrophy
YNB Glucose
N.D.
+0.2
+0.0
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.3
+0.0
N.D.
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.6
-0.1
N.D.
-0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.0
N.D.
+0.2
auxotrophy
Dropout Complete
N.D.
+0.3
+0.1
N.D.
-0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.2
-0.1
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.2
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
-0.2
+0.6
N.D.
-0.0
growth on oleic acid
YNB Glucose
N.D.
-0.2
+0.5
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.0
+0.4
N.D.
+0.1
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