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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12801 and 12802 are separated by 665 nucleotides
12802 and 12803 are separated by 328 nucleotides
12803 and 12804 are separated by 384 nucleotides
12804 and 12805 are separated by 236 nucleotides
mRNA_4433: 12801 - Hypothetical Protein, at 173,129 to 173,293
12801
mRNA_4434: 12802 - Hypothetical Protein, at 173,959 to 175,087
12802
mRNA_4435: 12803 - KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains, at 175,416 to 177,921
12803
mRNA_4436: 12804 - Hypothetical Protein, at 178,306 to 178,939
12804
mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179,176 to 181,994
12805
Group
Condition
mRNA
_4433
mRNA
_4434
mRNA
_4435
mRNA
_4436
mRNA
_4437
12801
12802
12803
12804
12805
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.4
-0.0
-0.0
-1.1
growth on oleic acid
YNB Glucose
N.D.
-0.0
-0.2
-0.4
-0.9
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.4
-0.3
+0.1
-0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.5
-0.0
+0.3
-0.9
growth on ricinoleic acid
YNB Glucose
N.D.
-0.2
-0.5
+0.4
-0.6
auxotrophy
YNB Glucose
N.D.
-0.2
+0.2
+0.1
-0.7
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.3
+0.0
+0.2
-0.5
growth on oleic acid
YNB Oleic Acid
N.D.
-0.0
-0.2
-0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.1
-0.2
+0.0
-0.3
auxotrophy
Dropout Complete
N.D.
-0.3
-0.1
+0.6
-0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
+0.1
+0.0
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+0.0
-0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
-0.1
+0.3
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+0.1
+0.1
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-0.6
+0.8
+0.1
growth on ypd
YPD
N.D.
+0.0
+0.0
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.0
+0.0
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.1
+0.2
+0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.3
+0.2
+0.2
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.3
+0.2
+0.3
+0.3
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