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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
12803 and 12804 are separated by 384 nucleotides
12804 and 12805 are separated by 236 nucleotides
12805 and 12806 are separated by 523 nucleotides
12806 and 12807 are separated by 193 nucleotides
mRNA_4435: 12803 - KOG0154 RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains, at 175,416 to 177,921
12803
mRNA_4436: 12804 - Hypothetical Protein, at 178,306 to 178,939
12804
mRNA_4437: 12805 - KOG4629 Predicted mechanosensitive ion channel, at 179,176 to 181,994
12805
mRNA_4438: 12806 - Hypothetical Protein, at 182,518 to 183,149
12806
mRNA_4439: 12807 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 183,343 to 183,707
12807
Group
Condition
mRNA
_4435
mRNA
_4436
mRNA
_4437
mRNA
_4438
mRNA
_4439
12803
12804
12805
12806
12807
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.0
-1.1
-0.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.0
+0.3
-0.9
-0.1
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.1
-0.5
+0.4
-1.1
growth on oleic acid
YNB Glucose
-0.2
-0.4
-0.9
-0.0
+0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
+0.2
-0.5
-0.8
-0.1
auxotrophy
YNB Glucose
+0.2
+0.1
-0.7
+0.0
-0.8
growth on ricinoleic acid
YNB Glucose
-0.5
+0.4
-0.6
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.2
-0.3
-0.1
+0.1
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.0
-0.3
+0.2
-0.2
growth on ypd
YPD
+0.0
+0.3
+0.1
-0.3
-0.5
auxotrophy
Dropout Complete
-0.1
+0.6
-0.7
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.1
-0.3
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.6
+0.8
+0.1
+0.4
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.3
-0.1
+0.0
+0.0
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.2
-0.1
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.1
-0.1
+0.8
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.0
+0.2
+0.5
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
-0.0
+0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.3
-0.2
-0.0
+0.7
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.1
+0.1
+0.3
+0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.3
+0.3
+0.4
+0.3
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